Preview

Hygiene and Sanitation

Advanced search
Open Access Open Access  Restricted Access Subscription Access

Possibilities of application of DNA Comet Assay (literature review)

https://doi.org/10.47470/0016-9900-2025-104-10-1369-1374

EDN: qjfrux

Abstract

To ensure the sanitary and epidemiological well-being of the population, it is necessary to monitor the state of the environment. Today, there is a wide range of methods available for identifying factors that can adversly affect human health, including those capable of disrupting genetic structures in cells. One of the key tools in genotoxicology that enables the assessment of DNA damage at the level of individual cells is the comet assay. Since its introduction in the 1980s, this method has undergone significant modifications aimed at increasing its sensitivity, specificity, and versatility of application. This review outlines the principles and basic protocols of the method, discusses modifications of the classical comet assay; methods for improving detection capability of different types of DNA damage and assessment of repair processes. A search for relevant studies published in the databases Scopus, Web of Science, PubMed, Russian Research Citation Index, for the period 1984–2024 was performed. The review includes information from forty seven full-text sources.

Conclusion. The DNA comet assay is becoming an increasingly in-demand tool in research aimed at ensuring the sanitary and epidemiological well-being of the population, identifying environmental and industrial factors dangerous to the genetic health of the population, assessing the individual sensitivity of human cells to genotoxicants to determine risk groups and implement preventive measures. The development of new protocols involving DNA repair enzymes specific to particular types of damage, along with the use of fluorescent dyes, allows evaluating DNA damage and repair processes. The use of cryopreservation of whole blood and lymphocytes for subsequent DNA analysis enables large-scale, long-term epidemiological studies. Automating comet assay analysis using deep learning methods will improve the accuracy of identifying DNA damage types, which is essential for clarifying the mechanisms of action of specific substances.

Contribution:
Gorenskaya O.V. – data collection and analysis, writing and editing the text;
Demidova Yu.V. – data collection;
Kotnova A.P. – data collection;
Ilyushina N.A.
– the study concept and design, data collection and analysis, writing and editing the text.
All authors are responsible for the integrity of all parts of the manuscript and approval of the manuscript final version

Conflict of interest. The authors declare no conflict of interest.

Funding. The study was carried out within the framework of the state task No. 121090800086-7.

Received: June 30, 2025 / Accepted: October 15, 2025 / Published: November 14, 2025

About the Authors

Olga V. Gorenskaya
Federal Scientific Center of Hygiene named after F.F. Erisman
Russian Federation

PhD (Biology), docent, senior researcher, Department of genetic toxicology, Institute of Hygiene, Toxicology of Pesticides and Chemical Safety, Federal Scientific Center of Hygiene named after F.F. Erisman, Mytishchi, 141014, Russian Federation

e-mail: gorenskaya.ov@fncg.ru



Yuliya V. Demidova
Federal Scientific Center of Hygiene named after F.F. Erisman
Russian Federation

Junior research, Department of genetic toxicology, Institute of Hygiene, Toxicology of Pesticides and Chemical Safety, Federal Scientific Center of Hygiene named after F.F. Erisman, Mytishchi, 141014, Russian Federation

e-mail: demidova.yu@fncg.ru



Alina P. Kotnova
Federal Scientific Center of Hygiene named after F.F. Erisman
Russian Federation

PhD (Biology), senior researcher, Department of genetic toxicology, Institute of Hygiene, Toxicology of Pesticides and Chemical Safety of the Federal Scientific Center of Hygiene named after F.F. Erisman, Mytishchi, 141014, Russian Federation

e-mail: kotnova.ap@fncg.ru



Natalia A. Ilyushina
Federal Scientific Center of Hygiene named after F.F. Erisman
Russian Federation

DSc (Biology), head, Department of genetic toxicology, Institute of Hygiene, Toxicology of Pesticides and Chemical Safety, Federal Scientific Center of Hygiene named after F.F. Erisman, Mytishchi, 141014, Russian Federation

e-mail: ilyushina.na@fncg.ru



References

1. Durnev A.D. Zhanataev A.K., Eremina N.V. Genetic Toxicology [Geneticheskaya toksikologiya]. Moscow: Mittel Press; 2022. https://elibrary.ru/fbwcbt (in Russian)

2. OECD Guidelines for the testing of chemicals. Test No. 486: Unscheduled DNA Synthesis (UDS) Test with Mammalian Liver Cells in Vivo; 1997. Available at: https://oecd.org/content/dam/oecd/en/publications/reports/1997/07/test-no-486-unscheduled-dna-synthesis-uds-test-with-mammalian-liver-cells-in-vivo_g1gh2977/9789264071520-en.pdf

3. OECD Guidelines for the testing of chemicals. Test No. 482: Genetic Toxicology: DNA Damage and Repair, Unscheduled DNA Synthesis in Mammalian Cells in vitro; 1986. Available at: https://oecd.org/en/topics/sub-issues/testing-of-chemicals/replaced-and-deleted-test-guidelines.html

4. Azqueta A., Collins A.R. The essential comet assay: a comprehensive guide to measuring DNA damage and repair. Arch. Toxicol. 2013; 87(6): 949–68. https://doi.org/10.1007/s00204-013-1070-0

5. Rajendran M.S., Prabhakaran R., Vignesh S., Nagarathinam B. Comet assay: is it a sensitive tool in ecogenotoxicology? In: Gothandam K.M., Srinivasan R., Ranjan S., Dasgupta N., Lichtfouse E., eds. Environmental Biotechnology Volume 4. Environmental Chemistry for a Sustainable World, vol. 68. Cham: Springer; 2021: 181–99. https://doi.org/10.1007/978-3-030-77795-1_6

6. Milić M., Ceppi M., Bruzzone M., Azqueta A., Brunborg G., Godschalk R., et al. The hCOMET project: International database comparison of results with the comet assay in human biomonitoring. Baseline frequency of DNA damage and effect of main confounders. Mutat. Res. Rev. Mutat. Res. 2021; 787: 108371. https://doi.org/10.1016/j.mrrev.2021.108371

7. Collins A., Koppen G., Valdiglesias V., Dusinska M., Kruszewski M., Møller P., et al. The comet assay as a tool for human biomonitoring studies: the ComNet project. Mutat. Res. Rev. Mutat. Res. 2014; 759: 27–39. https://doi.org/10.1016/j.mrrev.2013.10.001

8. Collins A., Møller P., Gajski G., Vodenková S., Abdulwahed A., Anderson D., et al. Measuring DNA modifications with the comet assay: a compendium of protocols. Nat. Protoc. 2023; 18(3): 929–89. https://doi.org/10.1038/s41596-022-00754-y

9. Møller P., Loft S. Oxidative damage to DNA and lipids as biomarkers of exposure to air pollution. Environ. Health Perspect. 2010; 118(8): 1126–36. https://doi.org/10.1289/ehp.0901725

10. Zhanatayev A.K., Durnev A.D., Seredenin S.B. DNA comet assay in genotoxicological studies. Gigiena i Sanitaria (Hygiene and Sanitation, Russian journal). 2011; 90(5): 86–90. https://elibrary.ru/ohikpp (in Russian)

11. Ostling O., Johanson K.J. Microelectrophoretic study of radiation-induced DNA damages in individual mammalian cells. Biochem. Biophys. Res. Commun. 1984; 123(1): 291–8. https://doi.org/10.1016/0006-291x(84)90411-x

12. Singh N.P., McCoy M.T., Tice R.R., Schneider E.L. A simple technique for quantitation of low levels of DNA damage in individual cells. Exp. Cell Res. 1988; 175(1): 184–91. https://doi.org/10.1016/0014-4827(88)90265-0

13. Bohn M., Heermann D.W. Diffusion-driven looping provides a consistent framework for chromatin organization. PLoS One. 2010; 5(8): e12218. https://doi.org/10.1371/journal.pone.0012218

14. Dittmer T.A., Misteli T. The lamin protein family. Genome Biol. 2011; 12(5): 222. https://doi.org/10.1186/gb-2011-12-5-222

15. Tice R.R., Agurell E., Anderson D., Burlinson B., Hartmann A., Kobayashi H., et al. Single cell gel/comet assay: guidelines for in vitro and in vivo genetic toxicology testing. Environ. Mol. Mutagen. 2000; 35(3): 206–21. https://vk.cc/cR4KWd

16. Collins A.R. The comet assay for DNA damage and repair: principles, applications, and limitations. Mol. Biotechnol. 2004; 26(3): 249–61. https://doi.org/10.1385/MB:26:3:249

17. Kumaravel T.S., Jha A.N. Reliable Comet assay measurements for detecting DNA damage induced by ionising radiation and chemicals. Mutat. Res. 2006; 605(1–2): 7–16. https://doi.org/10.1016/j.mrgentox.2006.03.002

18. Møller P., Azqueta A., Boutet-Robinet E., Koppen G., Bonassi S., Milić M., et al. Minimum Information for Reporting on the Comet Assay (MIRCA): recommendations for describing comet assay procedures and results. Nat. Protoc. 2020; 15(12): 3817–26. https://doi.org/10.1038/s41596-020-0398-1

19. Valverde M., Rojas E. Environmental and occupational biomonitoring using the Comet assay. Mutat. Res. 2009; 681(1): 93–109. https://doi.org/10.1016/j.mrrev.2008.11.001

20. Ladeira C., Koppen G., Scavone F., Giovannelli L. The comet assay for human biomonitoring: Effect of cryopreservation on DNA damage in different blood cell preparations. Mutat. Res. Genet. Toxicol. Environ. Mutagen. 2019; 843: 11–7. https://doi.org/10.1016/j.mrgentox.2019.02.002

21. Ladeira C., Møller P., Giovannelli L., Gajski G., Haveric A., Bankoglu E.E., et al. The comet assay as a tool in human biomonitoring studies of environmental and occupational exposure to chemicals – a systematic scoping review. Toxics. 2024; 12(4): 270. https://doi.org/10.3390/toxics12040270

22. Russo C., Acito M., Fatigoni C., Villarini M., Moretti M. B-comet assay (comet assay on buccal cells) for the evaluation of primary DNA damage in human biomonitoring studies. Int. J. Environ. Res. Public Health. 2020; 17(24): 9234. https://doi.org/10.3390/ijerph17249234

23. Owiti N.A., Kaushal S., Martin L., Sly J., Swartz C.D., Fowler J., et al. Using the HepaCometChip assay for broad-spectrum DNA damage analysis. Curr. Protoc. 2022; 2(9): e563. https://doi.org/10.1002/cpz1.563

24. Russo P., Lamonaca P., Milic M., Rojas E., Prinzi G., Cardaci V., et al. Biomarkers of DNA damage in COPD patients undergoing pulmonary rehabilitation: Integrating clinical parameters with genomic profiling. Mutat. Res. Genet. Toxicol. Environ. Mutagen. 2019; 843: 111–7. https://doi.org/10.1016/j.mrgentox.2019.04.003

25. Gajski G., Gerić M., Živković Semren T., Tariba Lovaković B., Oreščanin V., Pizent A. Application of the comet assay for the evaluation of DNA damage from frozen human whole blood samples: Implications for human biomonitoring. Toxicol. Lett. 2020; 319: 58–65. https://doi.org/10.1016/j.toxlet.2019.11.010

26. Plitta-Michalak B.P., Ramos A., Stepien D., Trusiak M., Michalak M. The comet assay as a method for assessing DNA damage in cryopreserved samples. Cryo. Letters. 2024; 45(1): 1–15.

27. Koppen G., De Prins S., Jacobs A., Nelen V., Schoeters G., Langie S.A.S. The comet assay in human biomonitoring: cryopreservation of whole blood and comparison with isolated mononuclear cells. Mutagenesis. 2018; 33(1): 41–7. https://doi.org/10.1093/mutage/gex034

28. Dalberto D., Nicolau C.C., Garcia A.L.H., Nordin A.P., Grivicich I., Silva J.D. Cytotoxic and genotoxic evaluation of cotinine using human neuroblastoma cells (SH-SY5Y). Genet. Mol. Biol. 2020; 43(2): e20190123. https://doi.org/10.1590/1678-4685-GMB-2019-0123

29. Bonassi S., Ceppi M., Møller P., Azqueta A., Milić M., Neri M., et al. DNA damage in circulating leukocytes measured with the comet assay may predict the risk of death. Sci. Rep. 2021; 11(1): 16793. https://doi.org/10.1038/s41598-021-95976-7

30. Muruzabal D., Sanz-Serrano J., Sauvaigo S., Gützkow K.B., López de Cerain A., Vettorazzi A., et al. Novel approach for the detection of alkylated bases using the enzyme-modified comet assay. Toxicol. Lett. 2020; 330: 108–17. https://doi.org/10.1016/j.toxlet.2020.04.021

31. Meng T., Zhang M., Song J., Dai Y., Duan H. Development of a co-culture model of mouse primary hepatocytes and splenocytes to evaluate xenobiotic genotoxicity using the medium-throughput Comet assay. Toxicol. In Vitro. 2020; 66: 104874. https://doi.org/10.1016/j.tiv.2020.104874

32. Pellegri V., Gorbi G., Buschini A. DNA damage detection by Comet Assay on Daphnia magna: Application in freshwater biomonitoring. Sci. Total. Environ. 2020; 705: 135780. https://doi.org/10.1016/j.scitotenv.2019.135780

33. Dusinska M., Collins A.R. Detection of oxidised purines and UV-induced photoproducts in DNA of single cells, by inclusion of lesion-specific enzymes in the comet assay. Altern. Lab. Anim. 1996; 24(3): 405–11.

34. Alekseeva I.V., Bakman A.S., Iakovlev D.A., Kuznetsov N.A., Fedorova O.S. Comparative analysis of the activity of the polymorphic variants of human uracil-DNA-glycosylase SMUG1 and MBD4. Molekulyarnaya biologiya. 2021; 55(2): 277–88. https://doi.org/10.31857/S0026898421020026 https://elibrary.ru/ftnumq (in Russian)

35. Catala G.N., Bestwick C.S., Russell W.R., Tortora K., Giovannelli L., Moyer M.P., et al. Folate, genomic stability and colon cancer: The use of single cell gel electrophoresis in assessing the impact of folate in vitro, in vivo and in human biomonitoring. Mutat. Res. Toxicol. Environ. Mutagen. 2019; 843: 73–80. https://doi.org/10.1016/j.mrgentox.2018.08.012

36. Holá M., Vágnerová R., Angelis K.J. Mutagenesis during plant responses to UVB radiation. Plant. Physiol. Biochem. 2015; 93: 29–33. https://doi.org/10.1016/j.plaphy.2014.12.013

37. Ilyushina N.A., Egorova O.V., Kotnova A.P., Gorenskaya O.V., Averyanova N.S. Scheme "Procedure for conducting Comet Assay to identify modified bases and AP sites in DNA". Patent RF N 146952; 2025. https://elibrary.ru/ylwpbp (in Russian)

38. Azqueta A., Langie S.A.S., Boutet-Robinet E., Duthie S., Ladeira C., Møller P., et al. DNA repair as a human biomonitoring tool: Comet assay approaches. Mutat. Res. Rev. Mutat. Res. 2019; 781: 71–87. https://doi.org/10.1016/j.mrrev.2019.03.002

39. Ngo L.P., Owiti N.A., Swartz C., Winters J., Su Y., Ge J., et al. Sensitive CometChip assay for screening potentially carcinogenic DNA adducts by trapping DNA repair intermediates. Nucleic Acids Res. 2020; 48: e13–e13. https://doi.org/10.1093/nar/gkz1077

40. Wentzel J.F., Gouws C., Huysamen C., Dyk Ev., Koekemoer G., Pretorius P.J. Assessing the DNA methylation status of single cells with the comet assay. Anal. Biochem. 2010; 400(2): 190–4. https://doi.org/10.1016/j.ab.2010.02.008

41. Townsend T.A., Parrish M.C., Engelward B.P., Manjanatha M.G. The development and validation of EpiComet-Chip, a modified high-throughput comet assay for the assessment of DNA methylation status. Environ. Mol. Mutagen. 2017; 58: 508–21. https://doi.org/10.1002/em.22101

42. Danson S., Ranson M., Denneny O., Cummings J., Ward T.H. Validation of the comet-X assay as a pharmacodynamic assay for measuring DNA cross-linking produced by the novel anticancer agent RH1 during a phase I clinical trial. Cancer Chemother. Pharmacol. 2007; 60(6): 851–61. https://doi.org/10.1007/s00280-007-0432-9

43. Shaposhnikov S., Azqueta A., Henriksson S., Meier S., Gaivão I., Huskisson N.H., et al. Twelve-gel slide format optimised for comet assay and fluorescent in situ hybridisation. Toxicol. Lett. 2010; 195(1): 31–4. https://doi.org/10.1016/j.toxlet.2010.02.017

44. Elje E., Hesler M., Rundén-Pran E., Mann P., Mariussen E., Wagner S., et al. The comet assay applied to HepG2 liver spheroids. Mutat. Res. Genet. Toxicol. Environ. Mutagen. 2019; 845: 403033. https://doi.org/10.1016/j.mrgentox.2019.03.006

45. Møller P., Knudsen L.E., Loft S., Wallin H. The comet assay as a rapid test in biomonitoring occupational exposure to DNA-damaging agents and effect of confounding factors. Cancer Epidemiol. Biomarkers Prev. 2000; 9(10): 1005–15.

46. Azqueta A., Ladeira C., Giovannelli L., Boutet-Robinet E., Bonassi S., Neri M., et al. Application of the comet assay in human biomonitoring: An hCOMET perspective. Mutat. Res. Rev. Mutat. Res. 2020; 783: 108288. https://doi.org/10.1016/j.mrrev.2019.108288

47. Softić A., Merdović N., Dlakić V., Mrđanović E., Mahmutović L., Ler D., et al. Comet Assay in the Digital Era: A Review of the Use of Artificial Intelligence for the Analysis of DNA Damage Based on the Results of the Comet Assay. In: Jarm T., Šmerc R., Mahnič-Kalamiza S., eds. 9th European Medical and Biological Engineering Conference. IFMBE Proceedings, vol 112. Cham: Springer; 2024. https://doi.org/10.1007/978-3-031-61625-9_20


Review

For citations:


Gorenskaya O.V., Demidova Yu.V., Kotnova A.P., Ilyushina N.A. Possibilities of application of DNA Comet Assay (literature review). Hygiene and Sanitation. 2025;104(10):1369-1374. (In Russ.) https://doi.org/10.47470/0016-9900-2025-104-10-1369-1374. EDN: qjfrux

Views: 10


ISSN 0016-9900 (Print)
ISSN 2412-0650 (Online)